EXframe: reusable framework for storage, analysis and visualization of genomics experiments.

ABSTRACT:

Background

Genome-wide experiments are routinely conducted to measure gene expression, DNA-protein interactions and epigenetic status. Structured metadata for these experiments is imperative for a complete understanding of experimental conditions, to enable consistent data processing and to allow retrieval, comparison, and integration of experimental results. Even though several repositories have been developed for genomics data, only a few provide annotation of samples and assays using controlled vocabularies. Moreover, many of them are tailored for a single type of technology or measurement and do not support the integration of multiple data types.

Results

We have developed eXframe - a reusable web-based framework for genomics experiments that provides 1) the ability to pu

SUBMITTER: Sinha AU 

PROVIDER: S-EPMC3235155 | biostudies-literature | 2011 Nov

REPOSITORIES: biostudies-literature