Dataset Information

VMD DisRg: New User-Friendly Implement for calculation distance and radius of gyration in VMD program.

ABSTRACT:

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Molecular dynamic simulation is a practical and powerful technique for analysis of protein structure. Several programs have been developed to facilitate the mentioned investigation, under them the visual molecular dynamic or VMD is the most frequently used programs. One of the beneficial properties of the VMD is its ability to be extendable by designing new plug-in. We introduce here a new facility of the VMD for distance analysis and radius of gyration of biopolymers such as protein and DNA.

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The database is available for free at http://trc.ajums.ac.ir/HomePage.aspx/?TabID/=12618/&Site/=trc.ajums.ac/&Lang/=fa-IR.

SUBMITTER: Falsafi-Zadeh S

PROVIDER: S-EPMC3338980 | biostudies-literature | 2012

REPOSITORIES: biostudies-literature

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VMD DisRg: New User-Friendly Implement for calculation distance and radius of gyration in VMD program.

Falsafi-Zadeh Sajad S Karimi Zahra Z Galehdari Hamid H

Bioinformation 20120413 7

<h4>Unlabelled</h4>Molecular dynamic simulation is a practical and powerful technique for analysis of protein structure. Several programs have been developed to facilitate the mentioned investigation, under them the visual molecular dynamic or VMD is the most frequently used programs. One of the beneficial properties of the VMD is its ability to be extendable by designing new plug-in. We introduce here a new facility of the VMD for distance analysis and radius of gyration of biopolymers such as ...[more]

PMID: 22553393

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Dataset Information

VMD DisRg: New User-Friendly Implement for calculation distance and radius of gyration in VMD program.

Unlabelled

Availability

Publications

VMD DisRg: New User-Friendly Implement for calculation distance and radius of gyration in VMD program.

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