Dataset Information

Common variants at 9p21 and 8q22 are associated with increased susceptibility to optic nerve degeneration in glaucoma.

ABSTRACT: Optic nerve degeneration caused by glaucoma is a leading cause of blindness worldwide. Patients affected by the normal-pressure form of glaucoma are more likely to harbor risk alleles for glaucoma-related optic nerve disease. We have performed a meta-analysis of two independent genome-wide association studies for primary open angle glaucoma (POAG) followed by a normal-pressure glaucoma (NPG, defined by intraocular pressure (IOP) less than 22 mmHg) subgroup analysis. The single-nucleotide polymorphisms that showed the most significant associations were tested for association with a second form of glaucoma, exfoliation-syndrome glaucoma. The overall meta-analysis of the GLAUGEN and NEIGHBOR dataset results (3,146 cases and 3,487 controls) identified significant associations between two loci and POAG: the CDKN2BAS region on 9p21 (rs2157719 [G], OR?=?0.69 [95%CI 0.63-0.75], p?=?1.86×10?¹?), and the SIX1/SIX6 region on chromosome 14q23 (rs10483727 [A], OR?=?1.32 [95%CI 1.21-1.43], p?=?3.87×10?¹¹). In sub-group analysis two loci were significantly associated with NPG: 9p21 containing the CDKN2BAS gene (rs2157719 [G], OR?=?0.58 [95% CI 0.50-0.67], p?=?1.17×10?¹²) and a probable regulatory region on 8q22 (rs284489 [G], OR?=?0.62 [95% CI 0.53-0.72], p?=?8.88×10?¹?). Both NPG loci were also nominally associated with a second type of glaucoma, exfoliation syndrome glaucoma (rs2157719 [G], OR?=?0.59 [95% CI 0.41-0.87], p?=?0.004 and rs284489 [G], OR?=?0.76 [95% CI 0.54-1.06], p?=?0.021), suggesting that these loci might contribute more generally to optic nerve degeneration in glaucoma. Because both loci influence transforming growth factor beta (TGF-beta) signaling, we performed a genomic pathway analysis that showed an association between the TGF-beta pathway and NPG (permuted p?=?0.009). These results suggest that neuro-protective therapies targeting TGF-beta signaling could be effective for multiple forms of glaucoma.

SUBMITTER: Wiggs JL

PROVIDER: S-EPMC3343074 | biostudies-literature | 2012

REPOSITORIES: biostudies-literature

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Common variants at 9p21 and 8q22 are associated with increased susceptibility to optic nerve degeneration in glaucoma.

Wiggs Janey L JL Yaspan Brian L BL Hauser Michael A MA Kang Jae H JH Allingham R Rand RR Olson Lana M LM Abdrabou Wael W Fan Bao J BJ Wang Dan Y DY Brodeur Wendy W Budenz Donald L DL Caprioli Joseph J Crenshaw Andrew A Crooks Kristy K Delbono Elizabeth E Doheny Kimberly F KF Friedman David S DS Gaasterland Douglas D Gaasterland Terry T Laurie Cathy C Lee Richard K RK Lichter Paul R PR Loomis Stephanie S Liu Yutao Y Medeiros Felipe A FA McCarty Cathy C Mirel Daniel D Moroi Sayoko E SE Musch David C DC Realini Anthony A Rozsa Frank W FW Schuman Joel S JS Scott Kathleen K Singh Kuldev K Stein Joshua D JD Trager Edward H EH Vanveldhuisen Paul P Vollrath Douglas D Wollstein Gadi G Yoneyama Sachiko S Zhang Kang K Weinreb Robert N RN Ernst Jason J Kellis Manolis M Masuda Tomohiro T Zack Don D Richards Julia E JE Pericak-Vance Margaret M Pasquale Louis R LR Haines Jonathan L JL

PLoS genetics 20120426 4

Optic nerve degeneration caused by glaucoma is a leading cause of blindness worldwide. Patients affected by the normal-pressure form of glaucoma are more likely to harbor risk alleles for glaucoma-related optic nerve disease. We have performed a meta-analysis of two independent genome-wide association studies for primary open angle glaucoma (POAG) followed by a normal-pressure glaucoma (NPG, defined by intraocular pressure (IOP) less than 22 mmHg) subgroup analysis. The single-nucleotide polymor ...[more]

PMID: 22570617

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Project description:In this study, we identify genomic regions that modulate the number of necrotic axons in optic nerves of a family of mice, some of which have severe glaucoma, and define a set of high priority positional candidate genes that modulate retinal ganglion cell (RGC) axonal degeneration. A large cohort of the BXD family were aged to greater than 13 months of age. Optic nerves from 74 strains and the DBA/2J (D2) parent were harvested, sectioned, and stained with p-phenylenediamine. Numbers of necrotic axons per optic nerve cross-section were counted from 1 to 10 replicates per genotype. Strain means and standard errors were uploaded into GeneNetwork 2 for mapping and systems genetics analyses (Trait 18614). The number of necrotic axons per nerve ranged from only a few hundred to more than 4,000. Using conventional interval mapping as well as linear mixed model mapping, we identified a single locus on chromosome 12 between 109 and 112.5 Mb with a likelihood ratio statistic (LRS) of ~18.5 (p genome-wide ~0.1). Axon necrosis is not linked to locations of major known glaucoma genes in this family, including Gpnmb, Tyrp1, Cdh11, Pou6f2, and Cacna2d1. This indicates that although these genes contribute to pigmentary dispersion or elevated IOP, none directly modulates axon necrosis. Of 156 positional candidates, eight genes-CDC42 binding protein kinase beta (Cdc42bpb); eukaryotic translation initiation factor 5 (Eif5); BCL2-associated athanogene 5 (Bag5); apoptogenic 1, mitochondrial (Apopt1); kinesin light chain 1 (Klc1); X-ray repair cross complementing 3 (Xrcc3); protein phosphatase 1, regulatory subunit 13B (Ppp1r13b); and transmembrane protein 179 (Tmem179)-passed stringent criteria and are high priority candidates. Several candidates are linked to mitochondria and/or axons, strengthening their plausible role as modulators of ON necrosis. Additional studies are required to validate and/or eliminate plausible candidates. Surprisingly, IOP and ON necrosis are inversely correlated across the BXD family in mice >13 months of age and these two traits share few genes among their top ocular and retinal correlates. These data suggest that the two traits are independently modulated or that a more complex and multifaceted approach is required to reveal their association.

Dataset Information

Common variants at 9p21 and 8q22 are associated with increased susceptibility to optic nerve degeneration in glaucoma.

Publications

Common variants at 9p21 and 8q22 are associated with increased susceptibility to optic nerve degeneration in glaucoma.

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