Project description:We identified 2 novel species, Mycobacterium novusgordonae and M. shingordonae, from sputum specimens of pulmonary disease patients in Japan. Genetic and biochemical analyses revealed a close relationship with M. paragordonae. One M. shingordonae case-patient experienced severe progressive infection, highlighting the variation in pathogenicity of the M. gordonae clade species.
Project description:An outbreak of granulomatous dermatitis was investigated in a captive population of moray eels. The affected eels had florid skin nodules concentrated around the head and trunk. Histopathological examination revealed extensive granulomatous inflammation within the dermis and subcutaneous fascial plane between the fat and axial musculature. Acid-fast rods were detected within the smallest lesions, which were presumably the ones that had developed earliest. Eventually, after several months of incubation at room temperature, a very slowly growing acid-fast organism was isolated. Sequencing of the 16S rRNA gene identified it as a Mycobacterium species closely related (0.59% divergence) to M. triplex, an SAV mycobacterium. Intradermal inoculation of healthy green moray eels with this organism reliably reproduced the lesion. Experimentally induced granulomatous dermatitis appeared within 2 weeks of inoculation and slowly but progressively expanded during the 2 months of the experiment. Live organisms were recovered from these lesions at all time points, fulfilling Koch's postulates for this bacterium. In a retrospective study of tissues collected between 1993 and 1999 from five spontaneous disease cases, acid-fast rods were consistently found within lesions, and a nested PCR for the rRNA gene also demonstrated the presence of mycobacteria within affected tissues.
Project description:Here, we report the complete genome sequence of Mycobacterium yongonense DSM 45126(T), genetically closely related to the INT5 genotype of M. intracellulare.
Project description:A rapidly growing mycobacterium was isolated five times from blood cultures from a 6-year-old female patient with relapsed pre-B-cell acute lymphocytic leukemia. All five isolates had identical nucleotide sequences for the first 500 bp of the 16S rRNA gene, indicative of a single species. High-performance liquid chromatography analysis of mycolic acids indicated that the species was similar to Mycobacterium smegmatis. Sequence analysis of the 16S rRNA gene (1,455 bp) for one isolate demonstrated that the species was closely related to Mycobacterium diernhoferi. Based on the phenotypic features and phylogenetic analysis, it was concluded that the isolates represented a novel rapidly growing Mycobacterium species. The name "Mycobacterium hackensackense" is proposed for this unique strain, 147-0552(T), which was deposited in the American Type Culture Collection as ATCC BAA-823(T).
Project description:Throughout evolution, organisms repeatedly developed elastic elements to power explosive body motions, overcoming ubiquitous limits on the power capacity of fast-contracting muscles. Seahorses evolved such a latch-mediated spring-actuated (LaMSA) mechanism; however, it is unclear how this mechanism powers the two complementary functions necessary for feeding: rapidly swinging the head towards the prey, and sucking water into the mouth to entrain it. Here, we combine flow visualization and hydrodynamic modelling to estimate the net power required for accelerating the suction feeding flows in 13 fish species. We show that the mass-specific power of suction feeding in seahorses is approximately three times higher than the maximum recorded from any vertebrate muscle, resulting in suction flows that are approximately eight times faster than similar-sized fishes. Using material testing, we reveal that the rapid contraction of the sternohyoideus tendons can release approximately 72% of the power needed to accelerate the water into the mouth. We conclude that the LaMSA system in seahorses is powered by two elastic elements, the sternohyoideus and epaxial tendons. These elements jointly actuate the coordinated acceleration of the head and the fluid in front of the mouth. These findings extend the known function, capacity and design of LaMSA systems.
Project description:Tail rot disease is associated with major economic losses in the seahorse aquaculture in China. This study aimed to isolate and identify the pathogen causing tail rot disease in seahorses. Three culturable intestinal bacteria strains were isolated from Hippocampus kuda specimens with tail rot disease. Strain HL11, HL12, and HL13 were identified as Pseudoalteromonas spongiae, Bacillus subtilis and Photobacterium ganghwense based on its morphological characteristics, physiological and biochemical properties, through 16S rRNA and gyrB sequencing, respectively. Challenge experiments using these strains on healthy H. kuda and bacterial re-isolation from challenged diseased seahorses showed that the bacteria strain named HL11 induced identical pathological symptoms, indicating that it is the causative pathogen of the disease. Antibiotic-resistance tests against of 32 antibiotics revealed that HL11 was highly sensitive to 13 kinds, while exhibited intermediate susceptibility to 6, and resistance to 13 kinds. Antibacterial tests of the bioactive agents showed that HL11 was susceptible to five kinds, including tea polyphenols, lactic acid, gallic acid, allicin, and polylysine; however, it was not susceptible to the other 13 kinds of bioactive agents. The results demonstrate the potential of using bioactive agents to replace antibiotics to generate an environmentally friendly mode of culturing seahorses.
Project description:Decline in the productivity of Eucalyptus hybrid cutting production in the Guangdong Province of China is linked to cutting rot associated with several Calonectria spp. The aim of this study was to identify these fungi using morphological and DNA sequence comparisons. Two previously undescribed Calonectria spp., Ca. pseudoreteaudii sp. nov. and Ca. cerciana sp. nov. were identified together with Ca. pauciramosa. Calonectria pseudoreteaudii resides in the Ca. reteaudii complex and Ca. cerciana is closely related to Ca. morganii. Connected to the discovery of Ca. pseudoreteaudii, species in the Ca. reteaudii complex were re-considered and the group is shown to accommodate two cryptic species. These originate from Australia and are described as Ca. queenslandica sp. nov. and Ca. terrae-reginae sp. nov.
Project description:The Identification of various mycobacterial species is critical for understanding their pathogenicity and epidemiology. Despite the existence of several established methods for identifying mycobacterial species, each of these methods has several significant limitations, including high costs, substantial time demands, and a restricted ability to detect a wide range of recoverable species. This study presents an in silico method using restriction fragment length polymorphism (RFLP) to differentially identify 75 clinically important mycobacterial species.The present investigation employed specific primer combinations to identify and generate a distinct hypervariable sequence across the ribosomal RNA gene. This unique sequence using appropriate restriction enzyme digestion followed by gel electrophoresis enabled the creation of highly precise and distinct patterns or profiles for each of the 75 medically relevant Mycobacterium species, including members of closely related Mycobacterium complex groups. This approach can quickly and reliably identify mycobacterial species, allowing for more timely treatment decisions and contributing to beneficial epidemiological investigations.
Project description:Molecular techniques are playing an important role in the diagnosis of nontuberculous mycobacterial infections. This case report describes a chronic soft tissue infection in an immunocompetent patient caused by a previously undescribed pigmented, rapidly growing Mycobacterium species, emphasizing the importance of clinical suspicion and effective laboratory techniques in the diagnosis and treatment of infection.
Project description:We investigated a case of cutaneous infection in an immunocompromised patient in China that was caused by a novel species within the Mycobacterium gordonae complex. Results of whole-genome sequencing indicated that some strains considered to be M. gordonae complex are actually polyphyletic and should be designated as closely related species.