Characterization of member of DUF1888 protein family, self-cleaving and self-assembling endopeptidase.

ABSTRACT: The crystal structure of SO1698 protein from Shewanella oneidensis was determined by a SAD method and refined to 1.57 Å. The structure is a β sandwich that unexpectedly consists of two polypeptides; the N-terminal fragment includes residues 1-116, and the C-terminal one includes residues 117-125. Electron density also displayed the Lys-98 side chain covalently linked to Asp-116. The putative active site residues involved in self-cleavage were identified; point mutants were produced and characterized structurally and in a biochemical assay. Numerical simulations utilizing molecular dynamics and hybrid quantum/classical calculations suggest a mechanism involving activation of a water molecule coordinated by a catalytic aspartic acid.

SUBMITTER: Osipiuk J 

PROVIDER: S-EPMC3365983 | biostudies-literature | 2012 Jun

REPOSITORIES: biostudies-literature