Dataset Information

Graph2tab, a library to convert experimental workflow graphs into tabular formats.

ABSTRACT:

Motivations

Spreadsheet-like tabular formats are ever more popular in the biomedical field as a mean for experimental reporting. The problem of converting the graph of an experimental workflow into a table-based representation occurs in many such formats and is not easy to solve.

Results

We describe graph2tab, a library that implements methods to realise such a conversion in a size-optimised way. Our solution is generic and can be adapted to specific cases of data exporters or data converters that need to be implemented.

Availability and implementation

The library source code and documentation are available at http://github.com/ISA-tools/graph2tab.

SUBMITTER: Brandizi M

PROVIDER: S-EPMC3371871 | biostudies-literature | 2012 Jun

REPOSITORIES: biostudies-literature

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Publications

graph2tab, a library to convert experimental workflow graphs into tabular formats.

Brandizi Marco M Kurbatova Natalja N Sarkans Ugis U Rocca-Serra Philippe P

Bioinformatics (Oxford, England) 20120503 12

<h4>Motivations</h4>Spreadsheet-like tabular formats are ever more popular in the biomedical field as a mean for experimental reporting. The problem of converting the graph of an experimental workflow into a table-based representation occurs in many such formats and is not easy to solve.<h4>Results</h4>We describe graph2tab, a library that implements methods to realise such a conversion in a size-optimised way. Our solution is generic and can be adapted to specific cases of data exporters or dat ...[more]

PMID: 22556367

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