Creating and analyzing pathway and protein interaction compendia for modelling signal transduction networks.

ABSTRACT:

Background

Understanding the information-processing capabilities of signal transduction networks, how those networks are disrupted in disease, and rationally designing therapies to manipulate diseased states require systematic and accurate reconstruction of network topology. Data on networks central to human physiology, such as the inflammatory signalling networks analyzed here, are found in a multiplicity of on-line resources of pathway and interactome databases (Cancer CellMap, GeneGo, KEGG, NCI-Pathway Interactome Database (NCI-PID), PANTHER, Reactome, I2D, and STRING). We sought to determine whether these databases contain overlapping information and whether they can be used to construct high reliability prior knowledge networks for subsequent modeling of experimental data.

SUBMITTER: Kirouac DC 

PROVIDER: S-EPMC3436686 | biostudies-literature | 2012 May

REPOSITORIES: biostudies-literature