SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis.

ABSTRACT: The subcellular location database for Arabidopsis proteins (SUBA3, http://suba.plantenergy.uwa.edu.au) combines manual literature curation of large-scale subcellular proteomics, fluorescent protein visualization and protein-protein interaction (PPI) datasets with subcellular targeting calls from 22 prediction programs. More than 14 500 new experimental locations have been added since its first release in 2007. Overall, nearly 650 000 new calls of subcellular location for 35 388 non-redundant Arabidopsis proteins are included (almost six times the information in the previous SUBA version). A re-designed interface makes the SUBA3 site more intuitive and easier to use than earlier versions and provides powerful options to search for PPIs within the context of cell compartmentation. SUBA3 also

SUBMITTER: Tanz SK 

PROVIDER: S-EPMC3531127 | biostudies-literature | 2013 Jan

REPOSITORIES: biostudies-literature