Structure of the essential diversity-generating retroelement protein bAvd and its functionally important interaction with reverse transcriptase.

ABSTRACT: Diversity-generating retroelements (DGRs) are the only known source of massive protein sequence variation in prokaryotes. These elements transfer coding information from a template region (TR) through an RNA intermediate to a protein-encoding variable region. This retrohoming process is accompanied by unique adenine-specific mutagenesis and, in the prototypical BPP-1 DGR, requires a reverse transcriptase (bRT) and an accessory variability determinant (bAvd) protein. To understand the role of bAvd, we determined its 2.69 Å resolution structure, which revealed a highly positively charged pentameric barrel. In accordance with its charge, bAvd bound both DNA and RNA, albeit without a discernable sequence preference. We found that the coding sequence of bAvd functioned as part of TR but identif

SUBMITTER: Alayyoubi M 

PROVIDER: S-EPMC3570691 | biostudies-literature | 2013 Feb

REPOSITORIES: biostudies-literature