Clustering of time-course gene expression profiles using normal mixture models with autoregressive random effects.

ABSTRACT:

Background

Time-course gene expression data such as yeast cell cycle data may be periodically expressed. To cluster such data, currently used Fourier series approximations of periodic gene expressions have been found not to be sufficiently adequate to model the complexity of the time-course data, partly due to their ignoring the dependence between the expression measurements over time and the correlation among gene expression profiles. We further investigate the advantages and limitations of available models in the literature and propose a new mixture model with autoregressive random effects of the first order for the clustering of time-course gene-expression profiles. Some simulations and real examples are given to demonstrate the usefulness of the proposed models.

Results

SUBMITTER: Wang K 

PROVIDER: S-EPMC3574839 | biostudies-literature | 2012 Nov

REPOSITORIES: biostudies-literature