Characterization of MicA interactions suggests a potential novel means of gene regulation by small non-coding RNAs.

ABSTRACT: MicA is a small non-coding RNA that regulates ompA mRNA translation in Escherichia coli. MicA has an inhibitory function, base pairing to the translation initiation region of target mRNAs through short sequences of complementarity, blocking their ribosome-binding sites. The MicA structure contains two stem loops, which impede its interaction with target mRNAs, and it is thought that the RNA chaperone protein Hfq, known to be involved in MicA regulation of ompA, may structurally remodel MicA to reveal the ompA-binding site for cognate pairing. To further characterize these interactions, we undertook biochemical and biophysical studies using native MicA and a 'stabilized' version, modified to mimic the conformational state of MicA where the ompA-binding site is exposed. Our data corroborate

SUBMITTER: Henderson CA 

PROVIDER: S-EPMC3597676 | biostudies-literature | 2013 Mar

REPOSITORIES: biostudies-literature