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A genomic day in the life of a clinical microbiology laboratory.

ABSTRACT: Next-generation sequencing technology is available to many clinical laboratories; however, it is not yet widely used in routine microbiology practice. To demonstrate the feasibility of using whole-genome sequencing in a routine clinical microbiology workflow, we sequenced the genome of every organism isolated in our laboratory for 1 day.

SUBMITTER: Long SW 

PROVIDER: S-EPMC3666789 | biostudies-literature | 2013 Apr

REPOSITORIES: biostudies-literature

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A genomic day in the life of a clinical microbiology laboratory.

Long S Wesley SW   Williams Dawn D   Valson Chandni C   Cantu Concepcion C CC   Cernoch Patricia P   Musser James M JM   Olsen Randall J RJ  

Journal of clinical microbiology 20130123 4

Next-generation sequencing technology is available to many clinical laboratories; however, it is not yet widely used in routine microbiology practice. To demonstrate the feasibility of using whole-genome sequencing in a routine clinical microbiology workflow, we sequenced the genome of every organism isolated in our laboratory for 1 day. ...[more]

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