Linear combination test for gene set analysis of a continuous phenotype.

ABSTRACT:

Background

Gene set analysis (GSA) methods test the association of sets of genes with a phenotype in gene expression microarray studies. Many GSA methods have been proposed, especially methods for use with a binary phenotype. Equally, if not more importantly however, is the ability to test the enrichment of a gene signature or pathway against the continuous phenotypes which are routinely and commonly observed in, for example, clinicopathological measurements. It is not always easy or meaningful to dichotomize continuous phenotypes into two classes, and attempting to do this may lead to the inaccurate classification of samples, which would affect the downstream enrichment analysis. In the present study, we have build on recent efforts to incorporate correlation structure within gene

SUBMITTER: Dinu I 

PROVIDER: S-EPMC3717275 | biostudies-literature | 2013 Jul

REPOSITORIES: biostudies-literature