Cake: a bioinformatics pipeline for the integrated analysis of somatic variants in cancer genomes.

ABSTRACT: We have developed Cake, a bioinformatics software pipeline that integrates four publicly available somatic variant-calling algorithms to identify single nucleotide variants with higher sensitivity and accuracy than any one algorithm alone. Cake can be run on a high-performance computer cluster or used as a stand-alone application. Availabilty: Cake is open-source and is available from http://cakesomatic.sourceforge.net/

SUBMITTER: Rashid M 

PROVIDER: S-EPMC3740632 | biostudies-literature | 2013 Sep

REPOSITORIES: biostudies-literature