A CellML simulation compiler and code generator using ODE solving schemes.

ABSTRACT: : Models written in description languages such as CellML are becoming a popular solution to the handling of complex cellular physiological models in biological function simulations. However, in order to fully simulate a model, boundary conditions and ordinary differential equation (ODE) solving schemes have to be combined with it. Though boundary conditions can be described in CellML, it is difficult to explicitly specify ODE solving schemes using existing tools. In this study, we define an ODE solving scheme description language-based on XML and propose a code generation system for biological function simulations. In the proposed system, biological simulation programs using various ODE solving schemes can be easily generated. We designed a two-stage approach where the system generates the

SUBMITTER: Punzalan FR 

PROVIDER: S-EPMC3778851 | biostudies-literature | 2012 Oct

REPOSITORIES: biostudies-literature