Analysis of the intestinal microbiota using SOLiD 16S rRNA gene sequencing and SOLiD shotgun sequencing.

ABSTRACT:

Background

Metagenomics seeks to understand microbial communities and assemblages by DNA sequencing. Technological advances in next generation sequencing technologies are fuelling a rapid growth in the number and scope of projects aiming to analyze complex microbial environments such as marine, soil or the gut. Recent improvements in longer read lengths and paired-sequencing allow better resolution in profiling microbial communities. While both 454 sequencing and Illumina sequencing have been used in numerous metagenomic studies, SOLiD sequencing is not commonly used in this area, as it is believed to be more suitable in the context of reference-guided projects.

Results

To investigate the performance of SOLiD sequencing in a metagenomic context, we compared taxonomic profile

SUBMITTER: Mitra S 

PROVIDER: S-EPMC3852202 | biostudies-literature | 2013

REPOSITORIES: biostudies-literature