Transcriptome profile of Trichoderma harzianum IOC-3844 induced by sugarcane bagasse.

ABSTRACT: Profiling the transcriptome that underlies biomass degradation by the fungus Trichoderma harzianum allows the identification of gene sequences with potential application in enzymatic hydrolysis processing. In the present study, the transcriptome of T. harzianum IOC-3844 was analyzed using RNA-seq technology. The sequencing generated 14.7 Gbp for downstream analyses. De novo assembly resulted in 32,396 contigs, which were submitted for identification and classified according to their identities. This analysis allowed us to define a principal set of T. harzianum genes that are involved in the degradation of cellulose and hemicellulose and the accessory genes that are involved in the depolymerization of biomass. An additional analysis of expression levels identified a set of carbohydrate-acti

SUBMITTER: Horta MA 

PROVIDER: S-EPMC3928278 | biostudies-literature | 2014

REPOSITORIES: biostudies-literature