Sequence depth, not PCR replication, improves ecological inference from next generation DNA sequencing.

ABSTRACT: Recent advances in molecular approaches and DNA sequencing have greatly progressed the field of ecology and allowed for the study of complex communities in unprecedented detail. Next generation sequencing (NGS) can reveal powerful insights into the diversity, composition, and dynamics of cryptic organisms, but results may be sensitive to a number of technical factors, including molecular practices used to generate amplicons, sequencing technology, and data processing. Despite the popularity of some techniques over others, explicit tests of the relative benefits they convey in molecular ecology studies remain scarce. Here we tested the effects of PCR replication, sequencing depth, and sequencing platform on ecological inference drawn from environmental samples of soil fungi. We sequenced re

SUBMITTER: Smith DP 

PROVIDER: S-EPMC3938664 | biostudies-literature | 2014

REPOSITORIES: biostudies-literature