Scanning of transposable elements and analyzing expression of transposase genes of sweet potato [Ipomoea batatas].

ABSTRACT:

Background

Transposable elements (TEs) are the most abundant genomic components in eukaryotes and affect the genome by their replications and movements to generate genetic plasticity. Sweet potato performs asexual reproduction generally and the TEs may be an important genetic factor for genome reorganization. Complete identification of TEs is essential for the study of genome evolution. However, the TEs of sweet potato are still poorly understood because of its complex hexaploid genome and difficulty in genome sequencing. The recent availability of the sweet potato transcriptome databases provides an opportunity for discovering and characterizing the expressed TEs.

Methodology/principal findings

We first established the integrated-transcriptome database by de novo assembling

SUBMITTER: Yan L 

PROVIDER: S-EPMC3946583 | biostudies-literature | 2014

REPOSITORIES: biostudies-literature