The PAMPA datasets: a metagenomic survey of microbial communities in Argentinean pampean soils.

ABSTRACT:

Background

Soil is among the most diverse and complex environments in the world. Soil microorganisms play an essential role in biogeochemical cycles and affect plant growth and crop production. However, our knowledge of the relationship between species-assemblies and soil ecosystem processes is still very limited. The aim of this study was to generate a comprehensive metagenomic survey to evaluate the effect of high-input agricultural practices on soil microbial communities.

Results

We collected soil samples from three different areas in the Argentinean Pampean region under three different types of land uses and two soil sources (bulk and rhizospheric). We extracted total DNA from all samples and also synthetized cDNA from rhizospheric samples. Using 454-FLX technology, we g

SUBMITTER: Rascovan N 

PROVIDER: S-EPMC3971610 | biostudies-literature | 2013 Jul

REPOSITORIES: biostudies-literature