Transcriptome sequencing and gene expression analysis of Trichoderma brevicompactum under different culture conditions.

ABSTRACT:

Background

Trichoderma brevicompactum is the Trichoderma species producing simple trichothecenes-trichodermin, a potential antifungal antibiotic and a protein synthesis inhibitor. However, the biosynthetic pathway of trichodermin in Trichoderma is not completely clarified. Therefore, transcriptome and gene expression profiling data for this species are needed as an important resource to better understand the mechanism of the trichodermin biosynthesis and provide a blueprint for further study of T. brevicompactum.

Results

In this study, de novo assembly of the T. brevicompactum transcriptome using the short-read sequencing technology (Illumina) was performed. In addition, two digital gene expression (DGE) libraries of T. brevicompactum under the trichodermin-producing and tri

SUBMITTER: Shentu XP 

PROVIDER: S-EPMC3978026 | biostudies-literature | 2014

REPOSITORIES: biostudies-literature