The evolution of the coding exome of the Arabidopsis species--the influences of DNA methylation, relative exon position, and exon length.

ABSTRACT:

Background

The evolution of the coding exome is a major driving force of functional divergence both between species and between protein isoforms. Exons at different positions in the transcript or in different transcript isoforms may (1) mutate at different rates due to variations in DNA methylation level; and (2) serve distinct biological roles, and thus be differentially targeted by natural selection. Furthermore, intrinsic exonic features, such as exon length, may also affect the evolution of individual exons. Importantly, the evolutionary effects of these intrinsic/extrinsic features may differ significantly between animals and plants. Such inter-lineage differences, however, have not been systematically examined.

Results

Here we examine how DNA methylation at CpG dinucle

SUBMITTER: Chen FC 

PROVIDER: S-EPMC4079183 | biostudies-literature | 2014 Jun

REPOSITORIES: biostudies-literature