Project description:The article by Nygaard and others (2016) proposes that applying batch correction approaches to microarray data from studies with unbalanced designs may inadvertently exaggerate the differences observed. In seeking to illustrate their point, Nygaard and others (2016) utilized a dataset (GSE61901) from a study we published (Towfic and others, 2014) and showed that one analysis pipeline utilizing the traditional approach to batch correction (ComBat) yielded over 1000 differentially expressed probesets, while an alternative approach proposed by Nygaard and others (2016). (utilizing batch as a fixed effect and averaging technical replicates) recovered 11 differentially expressed probesets.

| S-EPMC5379915 | biostudies-literature

Response letter regarding the letter to the editors by Brown et al.

Project description: Not available

| S-EPMC4964815 | biostudies-literature

Response to the letter by de Boer et al. (2022).

Project description: Not available

| S-EPMC9710074 | biostudies-literature

Response to Letter to the Editor by Goupell et al.

Project description: Not available

| S-EPMC11073616 | biostudies-literature

Blood glucose levels and COVID-19. Reply to Sardu C, D'Onofrio N, Balestrieri ML et al [letter] and Lepper PM, Bals R, Juni P et al [letter].

Project description: Not available

| S-EPMC7438680 | biostudies-literature

Answer to the letter by Frass et al. to our systematic review

Project description: Not available

| S-EPMC9470608 | biostudies-literature

Invited reply to the letter to the editor by McNally et al., 2021.

Project description: Not available

| S-EPMC7941972 | biostudies-literature

Response to letter to editor: 'Comment on Arch et al., Trials. 2016;17:517'.

Project description:In October 2015 we published the paper 'Measurement of HbA1c in multicentre diabetes trials - should blood samples be tested locally or sent to a central laboratory: an agreement analysis'. Chatterjee and Pradhan have submitted a letter to the editor asking critical questions regarding the methods we used. We offer this letter in response.Trial registrationEudract No. 2010-023792-25. Registered on 4 November 2010. ISRCTN No. ISRCTN29255275 . Registered on 12 November 2010.

| S-EPMC5446760 | biostudies-literature

Comments on the paper by Pleijel et al. (2008): Vouching for GenBank.

Project description: Not available

| S-EPMC2739410 | biostudies-literature