ASAView: database and tool for solvent accessibility representation in proteins.

ABSTRACT:

Background

Accessible surface area (ASA) or solvent accessibility of amino acids in a protein has important implications. Knowledge of surface residues helps in locating potential candidates of active sites. Therefore, a method to quickly see the surface residues in a two dimensional model would help to immediately understand the population of amino acid residues on the surface and in the inner core of the proteins.

Results

ASAView is an algorithm, an application and a database of schematic representations of solvent accessibility of amino acid residues within proteins. A characteristic two-dimensional spiral plot of solvent accessibility provides a convenient graphical view of residues in terms of their exposed surface areas. In addition, sequential plots in the form of bar

SUBMITTER: Ahmad S 

PROVIDER: S-EPMC420234 | biostudies-literature | 2004 May

REPOSITORIES: biostudies-literature