Gene regulatory network analysis reveals differences in site-specific cell fate determination in mammalian brain.

ABSTRACT: Neurogenesis-the generation of new neurons-is an ongoing process that persists in the adult mammalian brain of several species, including humans. In this work we analyze two discrete brain regions: the subventricular zone (SVZ) lining the walls of the lateral ventricles; and the subgranular zone (SGZ) of the dentate gyrus (DG) of the hippocampus in mice and shed light on the SVZ and SGZ specific neurogenesis. We propose a computational model that relies on the construction and analysis of region specific gene regulatory networks (GRNs) from the publicly available data on these two regions. Using this model a number of putative factors involved in neuronal stem cell (NSC) identity and maintenance were identified. We also demonstrate potential gender and niche-derived differences based on ce

SUBMITTER: Ertaylan G 

PROVIDER: S-EPMC4270183 | biostudies-literature | 2014

REPOSITORIES: biostudies-literature