YPED: an integrated bioinformatics suite and database for mass spectrometry-based proteomics research.

ABSTRACT: We report a significantly-enhanced bioinformatics suite and database for proteomics research called Yale Protein Expression Database (YPED) that is used by investigators at more than 300 institutions worldwide. YPED meets the data management, archival, and analysis needs of a high-throughput mass spectrometry-based proteomics research ranging from a single laboratory, group of laboratories within and beyond an institution, to the entire proteomics community. The current version is a significant improvement over the first version in that it contains new modules for liquid chromatography-tandem mass spectrometry (LC-MS/MS) database search results, label and label-free quantitative proteomic analysis, and several scoring outputs for phosphopeptide site localization. In addition, we have added

SUBMITTER: Colangelo CM 

PROVIDER: S-EPMC4411476 | biostudies-literature | 2015 Feb

REPOSITORIES: biostudies-literature