Dataset Information

MERS-CoV in Upper Respiratory Tract and Lungs of Dromedary Camels, Saudi Arabia, 2013-2014.

ABSTRACT: To assess the temporal dynamics of Middle East respiratory syndrome coronavirus (MERS-CoV) infection in dromedary camels, specimens were collected at 1-2 month intervals from 2 independent groups of animals during April 2013-May 2014 in Al-Ahsa Province, Saudi Arabia, and tested for MERS-CoV RNA by reverse transcription PCR. Of 96 live camels, 28 (29.2%) nasal swab samples were positive; of 91 camel carcasses, 56 (61.5%) lung tissue samples were positive. Positive samples were more commonly found among young animals (<4 years of age) than adults (>4 years of age). The proportions of positive samples varied by month for both groups; detection peaked during November 2013 and January 2014 and declined in March and May 2014. These findings further our understanding of MERS-CoV infection in dromedary camels and may help inform intervention strategies to reduce zoonotic infections.

SUBMITTER: Khalafalla AI

PROVIDER: S-EPMC4480395 | biostudies-literature | 2015 Jul

REPOSITORIES: biostudies-literature

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MERS-CoV in Upper Respiratory Tract and Lungs of Dromedary Camels, Saudi Arabia, 2013-2014.

Khalafalla Abdelmalik I AI Lu Xiaoyan X Al-Mubarak Abdullah I A AI Dalab Abdul Hafeed S AH Al-Busadah Khalid A S KA Erdman Dean D DD

Emerging infectious diseases 20150701 7

To assess the temporal dynamics of Middle East respiratory syndrome coronavirus (MERS-CoV) infection in dromedary camels, specimens were collected at 1-2 month intervals from 2 independent groups of animals during April 2013-May 2014 in Al-Ahsa Province, Saudi Arabia, and tested for MERS-CoV RNA by reverse transcription PCR. Of 96 live camels, 28 (29.2%) nasal swab samples were positive; of 91 camel carcasses, 56 (61.5%) lung tissue samples were positive. Positive samples were more commonly foun ...[more]

PMID: 26079346

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Project description:IntroductionThe Awarik camel population in southwestern Saudi Arabia exhibits unique genetic and phenotypic traits compared to other domestic camel populations. This study aims to explore the genomic signatures of positive selection in Awarik camels to understand their evolutionary history and identify genetic adaptations potentially shared with East African camel populations.MethodsWhole genome sequencing data from nine Awarik camels were analyzed using two robust intra-population haplotype-based statistical methods: integrated haplotype score (iHS) and number of segregating sites by length (nSL). These analyses were conducted to identify candidate regions under positive selection within the Awarik camel genome.Results and discussionThese analyses identified 66 and 53 candidate selection regions, encompassing 185 and 123 genes, respectively. The iHS analysis revealed significant selection signals on chromosomes 15 and 16, including a robust overlap on chromosome 15 (10 regions) involving the TRNAI-AAU gene, suggesting its critical role in adaptive processes. Additionally, chromosome 3 exhibited the highest number of candidate regions totaling 10. The nSL analysis highlighted statistically significant regions on chromosomes 2 and 7, as well as a high concentration of candidate regions on chromosome 14, totaling five regions. Notably, large candidate regions were also identified on chromosome 11 (200 kb: 51.750-51.950 kb) and chromosome 9 (325 kb: 45.825-46.150 kb). Functional annotation of these genes revealed involvement in diverse biological processes including olfactory activity, immune regulation, metabolism, insulin secretion, reproductive performance, kidney function, and cellular signaling, with specific genes like BAG5, septin 7, SLC13A1, PCED1B, BMPR1B, ZAR1, JAKMIP2, and NOTCH2 highlighted. These findings contribute to our understanding of the adaptive mechanisms of Awarik camels and have important implications for breeding and conservation strategies. Further research on these genetic adaptations, particularly those affecting immune response, is crucial to mitigate the impacts of climate change on camel populations.

Dataset Information

MERS-CoV in Upper Respiratory Tract and Lungs of Dromedary Camels, Saudi Arabia, 2013-2014.

Publications

MERS-CoV in Upper Respiratory Tract and Lungs of Dromedary Camels, Saudi Arabia, 2013-2014.

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