PhenStat: A Tool Kit for Standardized Analysis of High Throughput Phenotypic Data.

ABSTRACT: The lack of reproducibility with animal phenotyping experiments is a growing concern among the biomedical community. One contributing factor is the inadequate description of statistical analysis methods that prevents researchers from replicating results even when the original data are provided. Here we present PhenStat--a freely available R package that provides a variety of statistical methods for the identification of phenotypic associations. The methods have been developed for high throughput phenotyping pipelines implemented across various experimental designs with an emphasis on managing temporal variation. PhenStat is targeted to two user groups: small-scale users who wish to interact and test data from large resources and large-scale users who require an automated statistical analys

SUBMITTER: Kurbatova N 

PROVIDER: S-EPMC4493137 | biostudies-literature | 2015

REPOSITORIES: biostudies-literature