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Genome-wide DNA binding pattern of two-component system response regulator RhpR in Pseudomonas syringae.

ABSTRACT: Although Pseudomonas syringae uses the two-component system RhpRS to modulate the expression of type III secretion system (T3SS) genes and pathogenicity, the molecular mechanisms and the regulon of RhpRS have yet to be fully demonstrated. We have performed a genome-wide analysis of RhpR binding to DNA prepared from P. syringae pv. phaseolicola in order to identify candidate direct targets of RhpR-mediated transcriptional regulation, as described in our recent article [1]. The data are available from NCBI Gene Expression Omnibus (GEO) with the accession number GSE58533. Here we describe the detailed methods and data analyses of our RhpR ChIP-seq dataset.

SUBMITTER: Zhou T 

PROVIDER: S-EPMC4535888 | biostudies-literature | 2015 Jun

REPOSITORIES: biostudies-literature

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Genome-wide DNA binding pattern of two-component system response regulator RhpR in Pseudomonas syringae.

Zhou Tianhong T   Chen Kai K   Zhang Hai-Xin HX   Deng Xin X  

Genomics data 20150420

Although Pseudomonas syringae uses the two-component system RhpRS to modulate the expression of type III secretion system (T3SS) genes and pathogenicity, the molecular mechanisms and the regulon of RhpRS have yet to be fully demonstrated. We have performed a genome-wide analysis of RhpR binding to DNA prepared from P. syringae pv. phaseolicola in order to identify candidate direct targets of RhpR-mediated transcriptional regulation, as described in our recent article [1]. The data are available  ...[more]

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