Fingerprinting Soybean Germplasm and Its Utility in Genomic Research.

ABSTRACT: The United States Department of Agriculture, Soybean Germplasm Collection includes 18,480 domesticated soybean and 1168 wild soybean accessions introduced from 84 countries or developed in the United States. This collection was genotyped with the SoySNP50K BeadChip containing greater than 50K single-nucleotide polymorphisms. Redundant accessions were identified in the collection, and distinct genetic backgrounds of soybean from different geographic origins were observed that could be a unique resource for soybean genetic improvement. We detected a dramatic reduction of genetic diversity based on linkage disequilibrium and haplotype structure analyses of the wild, landrace, and North American cultivar populations and identified candidate regions associated with domestication and selection i

SUBMITTER: Song Q 

PROVIDER: S-EPMC4592982 | biostudies-literature | 2015 Jul

REPOSITORIES: biostudies-literature