LibRoadRunner: a high performance SBML simulation and analysis library.

ABSTRACT:

Motivation

This article presents libRoadRunner, an extensible, high-performance, cross-platform, open-source software library for the simulation and analysis of models expressed using Systems Biology Markup Language (SBML). SBML is the most widely used standard for representing dynamic networks, especially biochemical networks. libRoadRunner is fast enough to support large-scale problems such as tissue models, studies that require large numbers of repeated runs and interactive simulations.

Results

libRoadRunner is a self-contained library, able to run both as a component inside other tools via its C++ and C bindings, and interactively through its Python interface. Its Python Application Programming Interface (API) is similar to the APIs of MATLAB ( WWWMATHWORKSCOM: ) and Sci

SUBMITTER: Somogyi ET 

PROVIDER: S-EPMC4607739 | biostudies-literature | 2015 Oct

REPOSITORIES: biostudies-literature