Integrated metabolic modelling reveals cell-type specific epigenetic control points of the macrophage metabolic network.

ABSTRACT:

Background

The reconstruction of context-specific metabolic models from easily and reliably measurable features such as transcriptomics data will be increasingly important in research and medicine. Current reconstruction methods suffer from high computational effort and arbitrary threshold setting. Moreover, understanding the underlying epigenetic regulation might allow the identification of putative intervention points within metabolic networks. Genes under high regulatory load from multiple enhancers or super-enhancers are known key genes for disease and cell identity. However, their role in regulation of metabolism and their placement within the metabolic networks has not been studied.

Methods

Here we present FASTCORMICS, a fast and robust workflow for the creation of hig

SUBMITTER: Pacheco MP 

PROVIDER: S-EPMC4617894 | biostudies-literature | 2015 Oct

REPOSITORIES: biostudies-literature