Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data.

ABSTRACT:

Motivation

Detection of random errors and systematic biases is a crucial step of a robust pipeline for processing high-throughput sequencing (HTS) data. Bioinformatics software tools capable of performing this task are available, either for general analysis of HTS data or targeted to a specific sequencing technology. However, most of the existing QC instruments only allow processing of one sample at a time.

Results

Qualimap 2 represents a next step in the QC analysis of HTS data. Along with comprehensive single-sample analysis of alignment data, it includes new modes that allow simultaneous processing and comparison of multiple samples. As with the first version, the new features are available via both graphical and command line interface. Additionally, it includes a large n

SUBMITTER: Okonechnikov K 

PROVIDER: S-EPMC4708105 | biostudies-literature | 2016 Jan

REPOSITORIES: biostudies-literature