CANEapp: a user-friendly application for automated next generation transcriptomic data analysis.

ABSTRACT:

Background

Next generation sequencing (NGS) technologies are indispensable for molecular biology research, but data analysis represents the bottleneck in their application. Users need to be familiar with computer terminal commands, the Linux environment, and various software tools and scripts. Analysis workflows have to be optimized and experimentally validated to extract biologically meaningful data. Moreover, as larger datasets are being generated, their analysis requires use of high-performance servers.

Results

To address these needs, we developed CANEapp (application for Comprehensive automated Analysis of Next-generation sequencing Experiments), a unique suite that combines a Graphical User Interface (GUI) and an automated server-side analysis pipeline that is platform-

SUBMITTER: Velmeshev D 

PROVIDER: S-EPMC4710974 | biostudies-literature | 2016 Jan

REPOSITORIES: biostudies-literature