Protein Sequence Annotation Tool (PSAT): a centralized web-based meta-server for high-throughput sequence annotations.

ABSTRACT:

Background

Here we introduce the Protein Sequence Annotation Tool (PSAT), a web-based, sequence annotation meta-server for performing integrated, high-throughput, genome-wide sequence analyses. Our goals in building PSAT were to (1) create an extensible platform for integration of multiple sequence-based bioinformatics tools, (2) enable functional annotations and enzyme predictions over large input protein fasta data sets, and (3) provide a web interface for convenient execution of the tools.

Results

In this paper, we demonstrate the utility of PSAT by annotating the predicted peptide gene products of Herbaspirillum sp. strain RV1423, importing the results of PSAT into EC2KEGG, and using the resulting functional comparisons to identify a putative catabolic pathway, thereby d

SUBMITTER: Leung E 

PROVIDER: S-EPMC4721133 | biostudies-literature | 2016 Jan

REPOSITORIES: biostudies-literature