Refined elasticity sampling for Monte Carlo-based identification of stabilizing network patterns.

ABSTRACT:

Motivation

Structural kinetic modelling (SKM) is a framework to analyse whether a metabolic steady state remains stable under perturbation, without requiring detailed knowledge about individual rate equations. It provides a representation of the system's Jacobian matrix that depends solely on the network structure, steady state measurements, and the elasticities at the steady state. For a measured steady state, stability criteria can be derived by generating a large number of SKMs with randomly sampled elasticities and evaluating the resulting Jacobian matrices. The elasticity space can be analysed statistically in order to detect network positions that contribute significantly to the perturbation response. Here, we extend this approach by examining the kinetic feasibility of the e

SUBMITTER: Childs D 

PROVIDER: S-EPMC4765856 | biostudies-literature | 2015 Jun

REPOSITORIES: biostudies-literature