Dataset Information

CABRA: Cluster and Annotate Blast Results Algorithm.

ABSTRACT:

Background

Basic local alignment search tool (BLAST) searches are frequently used to look for homologous sequences and to annotate a query protein, but the increasing size of protein databases makes it difficult to review all results from a similarity search.

Findings

We developed a web tool called Cluster and Annotate Blast Results Algorithm (CABRA), which enables a rapid BLAST search in a variety of updated reference proteomes, and provides a new way to functionally evaluate the results by the subsequent clustering of the hits and annotation of the clusters. The tool can be accessed from the following web-resource: http://cbdm-01.zdv.uni-mainz.de/~munoz/CABRA .

Conclusions

Cluster and Annotate Blast Results Algorithm simplifies the analysis of the results of a BLAST search by providing an overview of the result's annotations organized in clusters that can be iteratively modified by the user.

SUBMITTER: Mier P

PROVIDER: S-EPMC4851773 | biostudies-literature | 2016 Apr

REPOSITORIES: biostudies-literature

ACCESS DATA

Publications

CABRA: Cluster and Annotate Blast Results Algorithm.

Mier Pablo P Andrade-Navarro Miguel A MA

BMC research notes 20160430

<h4>Background</h4>Basic local alignment search tool (BLAST) searches are frequently used to look for homologous sequences and to annotate a query protein, but the increasing size of protein databases makes it difficult to review all results from a similarity search.<h4>Findings</h4>We developed a web tool called Cluster and Annotate Blast Results Algorithm (CABRA), which enables a rapid BLAST search in a variety of updated reference proteomes, and provides a new way to functionally evaluate the ...[more]

PMID: 27129717

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Dataset Information

CABRA: Cluster and Annotate Blast Results Algorithm.

Background

Findings

Conclusions

Publications

CABRA: Cluster and Annotate Blast Results Algorithm.

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