CABRA: Cluster and Annotate Blast Results Algorithm.

ABSTRACT:

Background

Basic local alignment search tool (BLAST) searches are frequently used to look for homologous sequences and to annotate a query protein, but the increasing size of protein databases makes it difficult to review all results from a similarity search.

Findings

We developed a web tool called Cluster and Annotate Blast Results Algorithm (CABRA), which enables a rapid BLAST search in a variety of updated reference proteomes, and provides a new way to functionally evaluate the results by the subsequent clustering of the hits and annotation of the clusters. The tool can be accessed from the following web-resource: http://cbdm-01.zdv.uni-mainz.de/~munoz/CABRA .

Conclusions

Cluster and Annotate Blast Results Algorithm simplifies the analysis of the results of a BLAST

SUBMITTER: Mier P 

PROVIDER: S-EPMC4851773 | biostudies-literature | 2016 Apr

REPOSITORIES: biostudies-literature