MiARma-Seq: a comprehensive tool for miRNA, mRNA and circRNA analysis.

ABSTRACT: Large-scale RNAseq has substantially changed the transcriptomics field, as it enables an unprecedented amount of high resolution data to be acquired. However, the analysis of these data still poses a challenge to the research community. Many tools have been developed to overcome this problem, and to facilitate the study of miRNA expression profiles and those of their target genes. While a few of these enable both kinds of analysis to be performed, they also present certain limitations in terms of their requirements and/or the restrictions on data uploading. To avoid these restraints, we have developed a suite that offers the identification of miRNA, mRNA and circRNAs that can be applied to any sequenced organism. Additionally, it enables differential expression, miRNA-mRNA target predictio

SUBMITTER: Andres-Leon E 

PROVIDER: S-EPMC4863143 | biostudies-literature | 2016 May

REPOSITORIES: biostudies-literature