Network Modeling Identifies Patient-specific Pathways in Glioblastoma.

ABSTRACT: Glioblastoma is the most aggressive type of malignant human brain tumor. Molecular profiling experiments have revealed that these tumors are extremely heterogeneous. This heterogeneity is one of the principal challenges for developing targeted therapies. We hypothesize that despite the diverse molecular profiles, it might still be possible to identify common signaling changes that could be targeted in some or all tumors. Using a network modeling approach, we reconstruct the altered signaling pathways from tumor-specific phosphoproteomic data and known protein-protein interactions. We then develop a network-based strategy for identifying tumor specific proteins and pathways that were predicted by the models but not directly observed in the experiments. Among these hidden targets, we show th

SUBMITTER: Tuncbag N 

PROVIDER: S-EPMC4926112 | biostudies-literature | 2016 Jun

REPOSITORIES: biostudies-literature