The mzqLibrary--An open source Java library supporting the HUPO-PSI quantitative proteomics standard.

ABSTRACT: The mzQuantML standard has been developed by the Proteomics Standards Initiative for capturing, archiving and exchanging quantitative proteomic data, derived from mass spectrometry. It is a rich XML-based format, capable of representing data about two-dimensional features from LC-MS data, and peptides, proteins or groups of proteins that have been quantified from multiple samples. In this article we report the development of an open source Java-based library of routines for mzQuantML, called the mzqLibrary, and associated software for visualising data called the mzqViewer. The mzqLibrary contains routines for mapping (peptide) identifications on quantified features, inference of protein (group)-level quantification values from peptide-level values, normalisation and basic statistics for di

SUBMITTER: Qi D 

PROVIDER: S-EPMC4973685 | biostudies-literature | 2015 Sep

REPOSITORIES: biostudies-literature