MOCAT2: a metagenomic assembly, annotation and profiling framework.

ABSTRACT:

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MOCAT2 is a software pipeline for metagenomic sequence assembly and gene prediction with novel features for taxonomic and functional abundance profiling. The automated generation and efficient annotation of non-redundant reference catalogs by propagating pre-computed assignments from 18 databases covering various functional categories allows for fast and comprehensive functional characterization of metagenomes.

Availability and implementation

MOCAT2 is implemented in Perl 5 and Python 2.7, designed for 64-bit UNIX systems and offers support for high-performance computer usage via LSF, PBS or SGE queuing systems; source code is freely available under the GPL3 license at http://mocat.embl.de

Contact

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Supplementary information

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SUBMITTER: Kultima JR 

PROVIDER: S-EPMC4978931 | biostudies-literature | 2016 Aug

REPOSITORIES: biostudies-literature