Dataset Information

Membrane Assembly and Ion Transport Ability of a Fluorinated Nanopore.

ABSTRACT: A novel 21-residue peptide incorporating six fluorinated amino acids was prepared. It was designed to fold into an amphiphilic alpha helical structure of nanoscale length with one hydrophobic face and one fluorinated face. The formation of a fluorous interface serves as the main vector for the formation of a superstructure in a bilayer membrane. Fluorescence assays showed this ion channel's ability to facilitate the translocation of alkali metal ions through a phospholipid membrane, with selectivity for sodium ions. Computational studies showed that a tetramer structure is the most probable and stable supramolecular assembly for the active ion channel structure. The results illustrate the possibility of exploiting multiple Fδ-:M+ interactions for ion transport and using fluorous interfaces to create functional nanostructures.

SUBMITTER: Godbout R

PROVIDER: S-EPMC5106009 | biostudies-literature | 2016

REPOSITORIES: biostudies-literature

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Membrane Assembly and Ion Transport Ability of a Fluorinated Nanopore.

Godbout Raphaël R Légaré Sébastien S Auger Maud M Carpentier Claudia C Otis François F Auger Michèle M Lagüe Patrick P Voyer Normand N

PloS one 20161111 11

A novel 21-residue peptide incorporating six fluorinated amino acids was prepared. It was designed to fold into an amphiphilic alpha helical structure of nanoscale length with one hydrophobic face and one fluorinated face. The formation of a fluorous interface serves as the main vector for the formation of a superstructure in a bilayer membrane. Fluorescence assays showed this ion channel's ability to facilitate the translocation of alkali metal ions through a phospholipid membrane, with selecti ...[more]

PMID: 27835700

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Project description:The ionic current rectification (ICR) is a non-linear current-voltage response upon switching the polarity of the potential across nanopore which is similar to the I-V response in the semiconductor diode. The ICR phenomenon finds several potential applications in micro/nano-fluidics (e.g., Bio-sensors and Lab-on-Chip applications). From a biological application viewpoint, most biological fluids (e.g., blood, saliva, mucus, etc.) exhibit non-Newtonian visco-elastic behavior; their rheological properties differ from Newtonian fluids. Therefore, the resultant flow-field should show an additional dependence on the rheological material properties of viscoelastic fluids such as fluid relaxation time [Formula: see text] and fluid extensibility [Formula: see text]. Despite numerous potential applications, the comprehensive investigation of the viscoelastic behavior of the fluid on ionic concentration profile and ICR phenomena has not been attempted. ICR phenomena occur when the length scale and Debye layer thickness approaches to the same order. Therefore, this work extensively investigates the effect of visco-elasticity on the flow and ionic mass transfer along with the ICR phenomena in a single conical nanopore. The Poisson-Nernst-Planck (P-N-P) model coupled with momentum equations have been solved for a wide range of conditions such as, Deborah number, [Formula: see text], Debye length parameter, [Formula: see text], fluid extensibility parameter, [Formula: see text], applied electric potential, [Formula: see text], and surface charge density [Formula: see text] and [Formula: see text]. Limited results for Newtonian fluid ([Formula: see text], and [Formula: see text]) have also been shown in order to demonstrate the effectiveness of non-Newtonian fluid behaviour over the Newtonian fluid behaviour. Four distinct novel characteristics of electro-osmotic flow (EOF) in a conical nanopore have been investigated here, namely (1) detailed structure of flow field and velocity distribution in viscoelastic fluids (2) influence of Deborah number and fluid extensibility parameter on ionic current rectification (ICR) (3) volumetric flow rate calculation as a function of Deborah number and fluid extensibility parameter (4) effect of viscoelastic parameters on concentration distribution of ions in the nanopore. At high applied voltage, both the extensibility parameter and Deborah number facilitate the ICR phenomena. In addition, the ICR phenomena are observed to be more pronounced at low values of [Formula: see text] than the high values of [Formula: see text]. This effect is due to the overlapping of the electric double layer at low values of [Formula: see text].

Dataset Information

Membrane Assembly and Ion Transport Ability of a Fluorinated Nanopore.

Publications

Membrane Assembly and Ion Transport Ability of a Fluorinated Nanopore.

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