Comparative Study of Elastic Network Model and Protein Contact Network for Protein Complexes: The Hemoglobin Case.

ABSTRACT: The overall topology and interfacial interactions play key roles in understanding structural and functional principles of protein complexes. Elastic Network Model (ENM) and Protein Contact Network (PCN) are two widely used methods for high throughput investigation of structures and interactions within protein complexes. In this work, the comparative analysis of ENM and PCN relative to hemoglobin (Hb) was taken as case study. We examine four types of structural and dynamical paradigms, namely, conformational change between different states of Hbs, modular analysis, allosteric mechanisms studies, and interface characterization of an Hb. The comparative study shows that ENM has an advantage in studying dynamical properties and protein-protein interfaces, while PCN is better for describing pro

SUBMITTER: Hu G 

PROVIDER: S-EPMC5294226 | biostudies-literature | 2017

REPOSITORIES: biostudies-literature