CloVR-Comparative: automated, cloud-enabled comparative microbial genome sequence analysis pipeline.

ABSTRACT:

Background

The benefit of increasing genomic sequence data to the scientific community depends on easy-to-use, scalable bioinformatics support. CloVR-Comparative combines commonly used bioinformatics tools into an intuitive, automated, and cloud-enabled analysis pipeline for comparative microbial genomics.

Results

CloVR-Comparative runs on annotated complete or draft genome sequences that are uploaded by the user or selected via a taxonomic tree-based user interface and downloaded from NCBI. CloVR-Comparative runs reference-free multiple whole-genome alignments to determine unique, shared and core coding sequences (CDSs) and single nucleotide polymorphisms (SNPs). Output includes short summary reports and detailed text-based results files, graphical visualizations (phylogene

SUBMITTER: Agrawal S 

PROVIDER: S-EPMC5408420 | biostudies-literature | 2017 Apr

REPOSITORIES: biostudies-literature