JNSViewer-A JavaScript-based Nucleotide Sequence Viewer for DNA/RNA secondary structures.

ABSTRACT: Many tools are available for visualizing RNA or DNA secondary structures, but there is scarce implementation in JavaScript that provides seamless integration with the increasingly popular web computational platforms. We have developed JNSViewer, a highly interactive web service, which is bundled with several popular tools for DNA/RNA secondary structure prediction and can provide precise and interactive correspondence among nucleotides, dot-bracket data, secondary structure graphs, and genic annotations. In JNSViewer, users can perform RNA secondary structure predictions with different programs and settings, add customized genic annotations in GFF format to structure graphs, search for specific linear motifs, and extract relevant structure graphs of sub-sequences. JNSViewer also allows use

SUBMITTER: Shi J 

PROVIDER: S-EPMC5459502 | biostudies-literature | 2017

REPOSITORIES: biostudies-literature