AveDissR: An R function for assessing genetic distinctness and genetic redundancy.

ABSTRACT: Assessing genetic distinctness or redundancy is an important part of plant germplasm characterization. We previously introduced a new marker-based approach using the average dissimilarity of an accession to assess genetic distinctness or redundancy. However, this approach has not been widely applied, largely due to the lack of software to integrate separate analyses involving dissimilarity calculation, analysis of molecular variance, and principal coordinates analysis. An R function, AveDissR, was developed to integrate three separate analyses into one package for assessing genetic distinctness or redundancy. It can analyze large data sets of dominant or codominant markers such as amplified fragment length polymorphisms (AFLPs), simple sequence repeats (SSRs), or single-nucleotide polymorp

SUBMITTER: Yang MH 

PROVIDER: S-EPMC5546164 | biostudies-literature | 2017 Jul

REPOSITORIES: biostudies-literature