Differential genomic arrangements in Caryophyllales through deep transcriptome sequencing of A. hypochondriacus.

ABSTRACT: Genome duplication event in edible dicots under the orders Rosid and Asterid, common during the oligocene period, is missing for species under the order Caryophyllales. Despite this, grain amaranths not only survived this period but display many desirable traits missing in species under rosids and asterids. For example, grain amaranths display traits like C4 photosynthesis, high-lysine seeds, high-yield, drought resistance, tolerance to infection and resilience to stress. It is, therefore, of interest to look for minor genome rearrangements with potential functional implications that are unique to grain amaranths. Here, by deep sequencing and assembly of 16 transcriptomes (86.8 billion bases) we have interrogated differential genome rearrangement unique to Amaranthus hypochondriacus with p

SUBMITTER: Sunil M 

PROVIDER: S-EPMC5546567 | biostudies-literature | 2017

REPOSITORIES: biostudies-literature