Intron retention enhances gene regulatory complexity in vertebrates.

ABSTRACT:

Background

While intron retention (IR) is now widely accepted as an important mechanism of mammalian gene expression control, it remains the least studied form of alternative splicing. To delineate conserved features of IR, we performed an exhaustive phylogenetic analysis in a highly purified and functionally defined cell type comprising neutrophilic granulocytes from five vertebrate species spanning 430 million years of evolution.

Results

Our RNA-sequencing-based analysis suggests that IR increases gene regulatory complexity, which is indicated by a strong anti-correlation between the number of genes affected by IR and the number of protein-coding genes in the genome of individual species. Our results confirm that IR affects many orthologous or functionally related genes in

SUBMITTER: Schmitz U 

PROVIDER: S-EPMC5688624 | biostudies-literature | 2017 Nov

REPOSITORIES: biostudies-literature