A graphical user interface for RAId, a knowledge integrated proteomics analysis suite with accurate statistics.

ABSTRACT:

Objective

RAId is a software package that has been actively developed for the past 10 years for computationally and visually analyzing MS/MS data. Founded on rigorous statistical methods, RAId's core program computes accurate E-values for peptides and proteins identified during database searches. Making this robust tool readily accessible for the proteomics community by developing a graphical user interface (GUI) is our main goal here.

Results

We have constructed a graphical user interface to facilitate the use of RAId on users' local machines. Written in Java, RAId_GUI not only makes easy executions of RAId but also provides tools for data/spectra visualization, MS-product analysis, molecular isotopic distribution analysis, and graphing the retrieval versus the proportion o

SUBMITTER: Joyce B 

PROVIDER: S-EPMC5856202 | biostudies-literature | 2018 Mar

REPOSITORIES: biostudies-literature