Sampletrees and Rsampletrees: sampling gene genealogies conditional on SNP genotype data.

ABSTRACT:

Unlabelled

: The program sampletrees is a Markov chain Monte Carlo sampler of gene genealogies conditional on either phased or unphased SNP genotype data. The companion program Rsampletrees is for pre- and post-processing of sampletrees files, including setting up the files for sampletrees and storing and plotting the output of a sampletrees run.

Availability and implementation

sampletrees is implemented in C ++. The source code, documentation and test files are available at http://stat.sfu.ca/statgen/research/sampletrees.html The R package Rsampletrees is available on CRAN http://cran.r-project.org/web/packages/Rsampletrees/index.html

Contact

: [e-mail]

Supplementary information

Supplementary data are available at Bioinformatics online.

SUBMITTER: Burkett KM 

PROVIDER: S-EPMC5860401 | biostudies-literature | 2016 May

REPOSITORIES: biostudies-literature